Monday, September 5, 2011

Mold and Building Materials

We are always looking for uses for some of our antifungal Bacillus strain research.  Our library has a number of good strains, and we are always looking for more targets.  The article below may provide just the application target directed to those in the construction materials business either in building or manufacturing.  I believe it is important for those in the renovation and deconstruction business to take note as these molds represent certain hazards.    
In the June 2011 Applied Environmental Microbiology 77:4180-4188 is an interesting article entitled, “Associations between fungal species and water damaged building material”.  Here Andersen et al; studied the mold of 5300 different construction surface samples.  A long list of materials were examined such as plywood, brick, wallpaper, gypsum, concrete and many more.  Twenty seven genus and species of fungal species predominated across all materials with Penicillium being detected most often in 69.5% of the materials and type I allergy agent Aspergillus versicolor detected second at 26.5% of materials.  Of major concern were the toxic fungi Chaetomium spp. and Stachybotrys spp, isolated in 16.5% and 3.9% of the materials respectively.  While not all species are toxic, these might serve as indicators of prevalence.  In my opinion the most notable part of this article is just which of these materials the possible toxic species predominate.  Chaetomium spp were found on most materials, but were correlated the highest with 25% of concrete samples.  Stachybotrys the Genus that contains the “black mold” toxic species, was found in 25% of gypsum when tested qualitatively but in 39% of the samples distributed quantitatively.  Other noteworthy material associations was various Aspergillus species associated with concrete 20-32% of the surface samples including type I allergy causing Aspergillus versicolor. 
I guess the take home message here is to be careful with all the construction materials.  Wear those mold barrier masks when working on rennovations!  Let us know if somehow we can combine our research library with some of your applications.  www.mdgbio.com

Wednesday, August 3, 2011

Close to home

People often ask me if we have to go to exotic places to the isolate new bacteria.  There are articles about scientists going to the Amazon, or the oceanic thermal vents and other unique locations for microbial isolation.  I often tell people of a story I heard once that a scientist went to the Arctic to isolate cold temperature bacteria and was very successful.  Upon turning home, on a whim he decided to see if he could find cold temperature bacteria in his own backyard.  Not only did he find cold temperature bacteria, he found some of the same ones in found in the Arctic.  That hits close to home.  We like isolating strains here out of local ponds, lakes, carwash pits, you name it. 

Here's one that hits even closer to home.  Scientists decided to determine how many bacteria were found in belly buttons.  Go to this link for more details http://www.smartplanet.com/blog/science-scope/scientists-discover-662-new-microbes-8212-in-95-belly-buttons/9130.  Not only did they find 1400 new bacterial strains, they found 662 new microbes never discovered before!

Go figure, you can be microbial pioneer by studying your own belly button. 

Michael R. King, Ph.D.
mike.king@mdgbio.com
http://www.linkedin.com/in/mikekingmdg
http://www.mdgbio.com/

Syndromes and Aquaculture

Not being an expert in white spot virus, I was digging a little deeper into this virus commonly found in shrimp, especially in shrimp farms.  While we commonly call this white spot, others call it white spot syndrome virus.  This makes me recall another virus found in pigs known as PRRSV or porcine reproductive and respiratory syndrome virus.  Even though the virus has been isolated from both, they are known as syndromes.   Wikipedia defines syndrome as,” as the association of SEVERAL clinically recognizable features, signs (observed by a physician), symptoms (reported by the patient), phenomena or characteristics that often occur TOGETHER, so that the presence of one or more features alerts the physician to the possible presence of the others.  PRRS for instance is a virus that infects pigs, but doesn’t always cause the manifestation of the disease.  In fact other pathogens seem to open the door for PRRS.  Mycoplasma and Salmonella for instance in pigs.  However, this is still a syndrome as a number of other occurrences such as stress can increase the opportunity for PRRS to cause disease.  Viruses are all around us folks, so we have to be aware of the other pieces that open the door to these viruses.  Stress and other pathogens for instance.  In one paper, they researchers had found that in 200 shrimp tested, 2% had the signs of the virus, but PCR methods demonstrated 92% of the shrimp were positive for white spot (http://www.raisaquaculture.net/uploads/media/prevalance_of_WSSV-1_1.pdf). So the viruses are there, they are just waiting for a formal introduction. 
What are the other pieces of the syndrome that open the door for the virus?  The common theme I find is poor water quality which leads to stress.  Poor water quality seems to mean a number of issues including high alkalinity (by the way the white spots are from calcium deposits so maybe this makes sense), but also poor aeration, low water changeover and of course the fact they are swimming in their own waste.  I also see vibriosis commonly associated with white spot virus.  Vibriosis is the presence of aquatic Vibrios many of which are pathogens to shrimp.
Beyond vibrios I also wonder about the other pathogens that may be inviting the virus.  Do Aeromonas, Strep and Pasteurella open the doors for white spot?   It is real tempting to try to solve these problems by adding microbes.  We have many strains in our library that have unique properties relating to Vibrios.  However, you can’t help to think you are providing the aspirin for the headache, rather than solving the health problem that leads to the vibriosis and the virus, meaning poor water quality and most likely the balance of nature and ecology that occurs in these shrimp rearing environments.  Judging from the websites, having good water quality is the first step.  But yet I still see white spot everywhere and I still here of high antibiotic usage to deal with the pathogens, so some aren’t getting the message.  Our focus on returning wastewater and bioremediation to the proper balance and in turn microbial ecology has lead to some very interesting breakthroughs in our lab and in the field.
Let’s solve the problem rather than the symptom, which is counterintuitive as I make a living being a symptom solver.  When we start at the root, everyone wins.

Tuesday, August 2, 2011

Bioremediation and Doubling Times

We commonly do testing of hydrocarbon contaminated wastewater and find big differences in different types of treatments when it comes to microbial growth.  We will compare control growth rates compared to treatments that are pH adjusted, micronutrient adjusted, CNP adjusted and differences in aerobic vs facultative anaerobic growth.   In these types of studies, we can often find ways to get the microbes to a higher peak growth and obtain these peaks 2-3 days sooner.  I guess at first glance as long as your holding times are more than 2-3 days, who cares about who gets their first.  If you factor in microbe build up in the sludge, than possibly this doesn’t matter too much.  However, we do see with wasting and microbial cell death that the dosage and amount of strains are very important.  But this is really what I am writing about and we will leave this to another day. 
I am really writing about how this liquid prescreen is in our mind a rapid indicator of what and how fast we expect soil remediation results. We don’t like doing field work until we have at least some indicator of success in the lab.  So we will often using liquid studies, to provide this fast indicator of success or failure.  Better to fail in the lab then in the field.  As you know the doubling time of many of these rapid growing bacteria can be 20-30 MINUTES in the right media and conditions.  In soil, doubling time is reported to be around 50-100 HOURS, yes that’s not a typo, 50-100 HOURS.  Soil does not have ideal moisture/water activities, aeration, and often missing the right micronutrients and CNP ratio you would find in lab media.  Doing some rough calculations and making adjustments for lag time.  16 hrs in the lab will be equivalent to 35-70 days in the soil (assuming all the nutrients are right) to reach peak numbers of breakdown.   I’m not sure I am using the correct scientific calculation here, and should be considered a rough “what if” number.  So if I see peak results in 16 hrs in ideal conditions, should I expect peak results (not final results) in 35-70 days in the soil?  I guess that depends upon making sure the soil has the correct balance of moisture, nutrients, aeration and other amendments required to provide for proper growth.  In fact these are absolutely essential so the PATTON system applies here as well similar to wastewater.  How do these rough numbers match up with how long others say bioremediation should take?  Some of our clients have told us as quickly as 3 weeks but tend to find 8-12 weeks is more realistic.  That tracks with what I discuss above.  From what I see online and in literature I see numbers ranging from 60-180 days which is comparable to what I discuss below.  Most likely how well they apply their own PATTON system dictates the short or longer range time frames. 
So why am I babbling on about this?   Because I commonly find that different amendments in liquid can mean a difference between peak growth from 16 hrs with amendments to 70 hrs without amendments (micronutrients, macronutrients, bacteria, etc ;).  Not only do the peaks vary in growth activity, but the timeframe in liquid is astounding with differences of 54 hrs.  Big whoop, 54 hr difference in liquid.  But remember our soil doubling times.  So by my rough calculations a peak of 16 hrs would translate to 35-70 days in soil, whereas the control which is hitting the peak after 70 hrs translates to 153-306 days.  These numbers fall right in line with what I see in the literature or what I have heard in the field.   Further the control never reaches even half our amended highest yields so without the amendments I think they are looking at 306-712 days if double, and 712-1414 days if triple.  That’s a long time to wait to see if it’s working or not.  At that point we should stop talking in days, but rather in years.   
These liquid screen methods we believe are a nice prescreen to possible lab soil studies.  The prescreens give us the opportunity to look at a lot of different variables to save precious time, effort and money. 
That brings me to my next topic which I would like to hear from you.  What surfactants are best?  I haven’t had much luck finding good results with these as shown in literature but we aren’t surfactant people.  We do see some surfactant improvements but not as good as adding for instance micronutrients.  We have screened 100’s of micronutrients and have seemed to separate the good from the bad, but surfactants we are still at a loss.  I would love to hear your thoughts and opinions on this.  Most importantly would want a sample and target testing concentrations so we can educate ourselves better in this area.  Electron acceptors come next!